PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00040515001
Common NameGSBRNA2T00040515001, LOC106435221
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 335aa    MW: 37761.7 Da    PI: 7.6371
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00040515001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.8e-322478155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+Wt+eLH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl
  GSBRNA2T00040515001 24 KPRLKWTCELHHRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 78
                         79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-282278IPR009057Homeodomain-like
SuperFamilySSF466892.51E-152378IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-222479IPR006447Myb domain, plants
PfamPF002492.9E-62677IPR001005SANT/Myb domain
PfamPF143791.5E-22126172IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MESNTNNGNN HKAKVSLVLS TDAKPRLKWT CELHHRFIEA VNQLGGPNKA TPKGLMKAME  60
IPGLTLYHLK SHLQKYRLGK SLKFDDNKLE VSSASETQEA ESKNDSGDFR GNVNQENNDP  120
ANEGLKITEA LQLQMEVQKK LHEQIEVQRH LQVKIEAQGK YLQSVLMKAQ QTLAGYTSAS  180
LGMDFARSEL SRLASMMNPS SSFSELTQVE DYEEEGFLWC KKTENRGIRQ PRRSVESSLT  240
SSESSETKLN NNNEERKSME LPLMEIKSEV MTAKKTKRSL NDVLCVEHQP LKKRDFGVDD  300
DDEQHLRLSL NSYKKDMGTC PNMDLGLSGK KTLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00040515001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731542.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X2
TrEMBLA0A078GTS70.0A0A078GTS7_BRANA; BnaC02g19330D protein
STRINGBra007867.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-167G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]